Difference between revisions of "Materials"

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(Miscellaneous)
(Lectures, Labs & Homework)
 
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* Project 1: Hodgkin & Huxley without a voltage clamp.  Here is one of the original Hodgkin-Huxley papers: [[Media:Hodgkinconduction1952.pdf|Click here]].
 
* Project 1: Hodgkin & Huxley without a voltage clamp.  Here is one of the original Hodgkin-Huxley papers: [[Media:Hodgkinconduction1952.pdf|Click here]].
  
* Project 2: Detecting ionic currents.  Here is a recent paper that attempts to do the same thing with another method: [[Media:WillmsNeurofit2002.pdf|Click here]].
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* Project 2: Detecting ionic currents.  Here is a recent paper that attempts to do the same thing with another method: [[Media:WillmsNeurofit2002.pdf|Click here]].  Here is a paper with a model that has many currents: [[Media:LPCellModel.pdf|Click here]].
  
 
* Project 3: The chaotic ghostburster: Here is the original (and recent) ghostbursting paper: [[Media:Doironghostbursting2002.pdf|Click here]].
 
* Project 3: The chaotic ghostburster: Here is the original (and recent) ghostbursting paper: [[Media:Doironghostbursting2002.pdf|Click here]].
  
== Lectures & Labs ==
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== Lectures, Labs & Homework ==
  
 
* A: [[Introduction|Introduction to System Identification]]
 
* A: [[Introduction|Introduction to System Identification]]
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* C: [[MoreLikelihood|Likelihood for Two or More Data Points]]
 
* C: [[MoreLikelihood|Likelihood for Two or More Data Points]]
  
== Homework ==
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* D: [[NIA2Intro|An Introduction to Neurons in Action, Version 2]]
  
* Due Wednesday night, 1/28/09, at midnight: A.1, (A*).
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* E: [[NIA2Membrane|The Membrane Tutorial]]
* Due Monday night, 2/2/09, at midnight: The first email I sent to the class concerns the homework. I do not have a complete list of email addresses so if you did not receive the email, see below.  The homework will help you prepare for Tuesday's class, so do what you can, but I do not want you to spend more than an hour or two on it, beyond the time you spent in lab.  Please contact me if you are having difficulty with the assignment, so I have an idea what the difficult issues are and what I should focus on during Tuesday's class.
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* F: [[DiffEqs|Equilibrium Potential Tutorial And Equations For Labs E & F]]
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* G: [[NumericalDiffEqs|The Action Potential]]
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* H: [[Threshold|Threshold Tutorial]]
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* I: [[NumHH|Numerically Solving the Hodgkin Huxley Equation]]
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* J: [[VoltageClamp|Voltage Clamp Tutorial]]
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* K: [[PassiveMembrane|The Passive Axon Tutorial]]
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* L: [[TutorialPartA|The NEURON Tutorial, Part A]]
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* M [[TutorialPartB|The NEURON Tutorial, Part B]]
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* N: [[Unmyelinated|The Unmyelinated Axon Tutorial]]
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* O: [[Chattering|The Chattering Ion Channel Tutorial]]
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* P: [[Stylized|Creating a stylized ("stick figure") model cell]]
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* Q: [[Kinetics|Sodium & Potassium Channel Kinetics Tutorial]]
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* R: [[Kinetics_Continued|Sodium & Potassium Channel Kinetics Continued]]
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* S: [[MultipleRunFItter| Fitting a Function to Data with NEURON]]
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* T: [[Bayesian Filtering|Bayesian Filtering]]
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* U: [[Channel_Builder|Channel Builder]]
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* V: [[Kinetic_Scheme|Kinetic Scheme]]
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* W: [[Optimization|Optimization]]
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* X: [[Selection|Model Selection]]
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* Y: [[ModelDB|ModelDB: A Database of Hundreds of Neural Models]]
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* Z: [[Projects|Projects!]]
  
 
== Surveys ==
 
== Surveys ==
  
 
* [[Survey01| Survey 1]]
 
* [[Survey01| Survey 1]]
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* [[Survey02| Survey 2]]
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* [[Survey03| Survey 3]]
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* [[Survey04| Survey 4]]
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* [[Survey05| Survey 5]]
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* [[Survey06| Survey 6]]
  
 
== Miscellaneous ==
 
== Miscellaneous ==
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* [http://advanced.jhu.edu/students/jshare/ Setting up JShare]
 
* [http://advanced.jhu.edu/students/jshare/ Setting up JShare]
  
* Homework File Name Convention: "Lab#_First_Last.ppt"  Where # is the lab letter, First is your first name, and Last is your last name. And please use .ppt rather than .pptx
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* [[Filename_Convention|Homework File Name Convention]].
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* A syllabus for a [[Media:SpallSyllabus.pdf|related class]].
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* A [[Media:YaleTalk.pdf|talk I gave at Yale]].
  
 
== Group Email to Students ==
 
== Group Email to Students ==
  
 
* [[Email_Sunday_Feb_01| Resent Monday, Feb 2]]
 
* [[Email_Sunday_Feb_01| Resent Monday, Feb 2]]

Latest revision as of 19:52, 29 April 2009

Projects

The project ideas are described near the bottom of the Main Page. (To get the Main Page, click on the image of the fish at left.) Here are some relevant papers.

  • Project 1: Hodgkin & Huxley without a voltage clamp. Here is one of the original Hodgkin-Huxley papers: Click here.
  • Project 2: Detecting ionic currents. Here is a recent paper that attempts to do the same thing with another method: Click here. Here is a paper with a model that has many currents: Click here.
  • Project 3: The chaotic ghostburster: Here is the original (and recent) ghostbursting paper: Click here.

Lectures, Labs & Homework

Surveys

Miscellaneous

Group Email to Students